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Polyomavirus Sequences

Naming Key A nickname was assigned to each polyomavirus species based on host animal of origin or an established abbreviation. This MS Excel table provides a naming key and lists genetic characteristics for examples of each known polyomavirus species.
Drawing Trees Instructions for drawing basic phylogenetic trees based on polyomavirus sequences.
Annotated Genomes Curated nucleotide maps for the complete genomes of representative polyomavirus species (GenBank format)
Genomes Nucleotide sequences of known polyomavirus species in FastA format. Fish polyomavirus genomes have been excluded since they are essentially unalignable at the nucleotide level.
VP1 Polyomavirus VP1 protein sequences.
VP2 Polyomavirus VP2 protein sequences. The names of VP3-less species are marked with asterisks.
Large T Polyomavirus Large T Antigen (LT) protein sequences.
small t Polyomavirus small t antigen (sT) protein sequences.
ALTO Polyomavirus alternative Large T ORF (ALTO) protein sequences.
ALTO Partial VP1 peptide sequences of interest.
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