LOCUS P8RWB.TXT 7828 BP DS-DNA CIRCULAR SYN 17-MAY-2003
DEFINITION -
ACCESSION
-
KEYWORDS -
SOURCE -
FEATURES
Location/Qualifiers
misc_feature
complement(>29..2016)
/note="2kb EcoR1-Bgl frag with SAR in it"
promoter <2062..>2405
/note="SV40 promoter"
misc_feature
complement(>2062..2070)
/note="SV40 minor late 19S RNA"
enhancer 2084..2226
/note="SV40 enhancer elements"
misc_feature
2231..2294
/note="SV40 21bp repeats"
rep_origin
2251..>2405
/note="SV40 Ori"
mRNA
2300..2306
/note="late-early transcription startpoints"
mutation 2320..2320
/note="G->A kills SELP ATG"
mRNA
2340..2346
/note="early-early transcription start points"
misc_feature
2405..2405
/note="end homology to SV40"
promoter 2440..2494
/note="EM7 promoter"
CDS
2514..2936
/note="Blasticidin R"
polyA_signal
2966..>3187
/note="SV40 Late PolyA"
enhancer <3279..3476
/note="EF-1alpha promoter core domain"
promoter <3279..>4457
/note="EF1a promoter and UTR"
exon
3477..3509
/note="EF-1a exon 1"
intron 3510..4449
/note="EF-1a intron A"
exon
4449..4457
/note="EF-1a exon 2 leader"
CDS
4554..5228
/note="dsRed-Express"
CDS
<5229..>5243
/note="artificial tail"
mRNA
5287..>5875
/note="WPRE"
polyA_signal
5911..6579
/note="hEF1a polyA signal"
rep_origin
6580..7313
/note="MB1 Ori"
promoter 7334..7380
/note="EM7 promoter"
CDS
7401..7775
/note="Zeo"
terminator
7776..7828
/note="terminator (rpmB/G)"
BASE COUNT 2045 A 1780 C 1933 G 2070 T 0 OTHER
ORIGIN -
1 CCCTGCATCA AGCTTGGTAC
CGAGCTCGGA TCTAAATAAA CTTATAAATT GTGAGAGAAA
61 TTAATGAATG TCTAAGTTAA
TGCAGAAACG GAGAGACATA CTATATTCAT GAACTAAAAG
121 ACTTAATATT GTGAAGGTAT ACTTTCTTTC
CACATAAATT TGTAGTCAAT ATGTTCACCC
181 CAAAAAAGCT GTTTGTTAAC TTGCCAACCT
CATTCTAAAA TGTATATAGA AGCCCAAAAG
241 ACAATAACAA AAATATTCTT GTAGAACAAA
ATGGGAAAGA ATGTTCCACT AAATATCAAG
301 ATTTAGAGCA AAGCATGAGA TGTGTGGGGA
TAGACAGTGA GGCTGATAAA ATAGAGTAGA
361 GCTCAGAAAC AGACCCATTG ATATATGTAA
GTGACCTATG AAAAAAATAT GGCATTTTAC
421 AATGGGAAAA TGATGATCTT TTTCTTTTTT
AGAAAAACAG GGAAATATAT TTATATGTAA
481 AAAATAAAAG GGAACCCATA TGTCATACCA
TACACACAAA AAAATTCCAG TGAATTATAA
541 GTCTAAATGG AGAAGGCAAA ACTTTAAATC
TTTTAGAAAA TAATATAGAA GCATGCCATC
601 ATGACTTCAG TGTAGAGAAA AATTTCTTAT
GACTCAAAGT CCTAACCACA AAGAAAAGAT
661 TGTTAATTAG ATTGCATGAA TATTAAGACT
TATTTTTAAA ATTAAAAAAC CATTAAGAAA
721 AGTCAGGCCA TAGAATGACA GAAAATATTT
GCAACACCCC AGTAAAGAGA ATTGTAATAT
781 GCAGATTATA AAAAGAAGTC TTACAAATCA
GTAAAAAATA AAACTAGACA AAAATTTGAA
841 CAGATGAAAG AGAAACTCTA AATAATCATT
ACACATGAGA AACTCAATCT CAGAAATCAG
901 AGAACTATCA TTGCATATAC ACTAAATTAG
AGAAATATTA AAAGGCTAAG TAACATCTGT
961 GGCAATATTG ATGGTATATA ACCTTGATAT
GATGTGATGA GAACAGTACT TTACCCCATG
1021 GGCTTCCTCC CCAAACCCTT ACCCCAGTAT AAATCATGAC AAATATACTT TAAAAACCAT
1081 TACCCTATAT CTAACCAGTA CTCCTCAAAA CTGTCAAGGT CATCAAAAAT AAGAAAAGTC
1141 TGAGGAACTG TCAAAACTAA GAGGAACCCA AGGAGACATG AGAATTATAT GTAATGTGGC
1201 ATTCTGAATG AGATCCCAGA ACAGAAAAAG AACAGTAGCT AAAAAACTAA TGAAATATAA
1261 ATAAAGTTTG AACTTTAGTT TTTTTTAAAA AAGAGTAGCA TTAACACGGC AAAGCCATTT
1321 TCATATTTTT CTTGAACATT AAGTACAAGT CTATAATTAA AAATTTTTTA AATGTAGTCT
1381 GGAACATTGC CAGAAACAGA AGTACAGCAG CTATCTGTGC TGTCGCCTAA CTATCCATAG
1441 CTGATTGGTC TAAAATGAGA TACATCAACG CTCCTCCATG TTTTTTGTTT TCTTTTTAAA
1501 TGAAAAACTT TATTTTTTAA GAGGAGTTTC AGGTTCATAG CAAAATTGAG AGGAAGGTAC
1561 ATTCAAGCTG AGGAAGTTTT CCTCTATTCC TAGTTTACTG AGAGATTGCA TCATGAATGG
1621 GTGTTAAATT TTGTCAAATG CTTTTTCTGT GTCTATCAAT ATGACCATGT GATTTTCTTC
1681 TTTAACCTGT TGATGGGACA AATTACGTTA ATTGATTTTC AAACGTTGAA CCACCCTTAC
1741 ATATCTGGAA TAAATTCTAC TTGGTTGTGG TGTATATTTT TTGATACATT CTTGGATTCT
1801 TTTTGCTAAT ATTTTGTTGA AAATGTTTGT ATCTTTGTTC ATGAGAGATA TTGGTCTGTT
1861 GTTTTCTTTT CTTGTAATGT CATTTTCTAG TTCCGGTATT AAGGTAATGC TGGCCTAGTT
1921 GAATGATTTA GGAAGTATTC CCTCTGCTTC TGTCTTCTGA AAGAGATTGT AGAAAGTTGA
1981 TACAATTTTT TTTTCTTTAA ATATTTGATA GAATTCTGCA GGGCCTGAAA TAACCTCTGA
2041 AAGAGGAACT TGGTTAGGTA CCTGTGGAAT GTGTGTCAGT TAGGGTGTGG AAAGTCCCCA
2101 GGCTCCCCAG CAGGCAGAAG TATGCAAAGC ATGCATCTCA ATTAGTCAGC AACCAGGTGT
2161 GGAAAGTCCC CAGGCTCCCC AGCAGGCAGA AGTATGCAAA GCATGCATCT CAATTAGTCA
2221 GCAACCATAG TCCCGCCCCT AACTCCGCCC ATCCCGCCCC TAACTCCGCC CAGTTCCGCC
2281 CATTCTCCGC CCCATGGCTG ACTAATTTTT TTTATTTATA CAGAGGCCGA GGCCGCCTCG
2341 GCCTCTGAGC TATTCCAGAA GTAGTGAGGA GGCTTTTTTG GAGGCCTAGG CTTTTGCAAA
2401 AAGCTCCCGG GAGCTTGTAT ATCCATTTTC GGATCTGATC AGCACGTGTT GACAATTAAT
2461 CATCGGCATA GTATATCGGC ATAGTATAAT ACGACAAGGT GAGGAACTAA ATCATGAAGA
2521 CCTTCAACAT CTCTCAGCAG GATCTGGAGC TGGTGGAGGT CGCCACTGAG AAGATCACCA
2581 TGCTCTATGA GGACAACAAG
CACCATGTCG GGGCGGCCAT CAGGACCAAG ACTGGGGAGA
2641 TCATCTCTGC TGTCCACATT GAGGCCTACA TTGGCAGGGT CACTGTCTGT GCTGAAGCCA
2701 TTGCCATTGG GTCTGCTGTG AGCAACGGGC AGAAGGACTT TGACACCATT GTGGCTGTCA
2761 GGCACCCCTA CTCTGATGAG GTGGACAGAT CCATCAGGGT GGTCAGCCCC TGTGGCATGT
2821 GCAGAGAGCT CATCTCTGAC TATGCTCCTG ACTGCTTTGT GCTCATTGAG ATGAATGGCA
2881 AGCTGGTCAA AACCACCATT GAGGAACTCA TCCCCCTCAA GTACACCAGG AACTAAACCT
2941 GAATTCGCTA GAGGGCCGCT TCGAGCAGAC ATGATAAGAT ACATTGATGA GTTTGGACAA
3001 ACCACAACTA GAATGCAGTG AAAAAAATGC TTTATTTGTG AAATTTGTGA TGCTATTGCT
3061 TTATTTGTAA CCATTATAAG CTGCAATAAA CAAGTTAACA ACAACAATTG CATTCATTTT
3121 ATGTTTCAGG TTCAGGGGGA GGTGTGGGAG GTTTTTTAAA GCAAGTAAAA CCTCTACAAA
3181 TGTGGTAAAA TCGATAAGGA TCCGGGCTGG CGTAATAGCG AAGAGGCCCG CACCGATCGC
3241 CCTTCCCAAC AGTTGCAGGT GGAGAAGAGC ATGCGTGAGG CTCCGGTGCC CGTCAGTGGG
3301 CAGAGCGCAC ATCGCCCACA GTCCCCGAGA AGTTGGGGGG AGGGGTCGGC AATTGAACCG
3361 GTGCCTAGAG AAGGTGGCGC GGGGTAAACT GGGAAAGTGA TGTCGTGTAC TGGCTCCGCC
3421 CTTTTCCCGA GGGTGGGGGA GAACCGTATA TAAGTGCAGT AGTCGCTGTG AACGTTCTTT
3481 TTCGCAACGG GTTTGCCGCC AGAACACAGG TAAGTGCCGT GTGTGGTTCC CGCGGGCCTG
3541 GCCTCTTTAC GGGTTATGGC CCTTGCGTGC CTTGAATTAC TTCCACCTGG CTGCAGTACG
3601 TGATTCTTGA TCCCGAGCTT CGGGTTGGAA GTGGGTGGGA GAGTTCGAGG CCTTGCGCTT
3661 AAGGAGCCCC TTCGCCTCGT GCTTGAGTTG AGGCCTGGCC TGGGCGCTGG GGCCGCCGCG
3721 TGCGAATCTG GTGGCACCTT CGCGCCTGTC TCGCTGCTTT CGATAAGTCT CTAGCCATTT
3781 AAAATTTTTG ATGACCTGCT GCGACGCTTT TTTTCTGGCA AGATAGTCTT GTAAATGCGG
3841 GCCAAGATCT GCACACTGGT ATTTCGGTTT TTGGGGCCGC GGGCGGCGAC GGGGCCCGTG
3901 CGTCCCAGCG CACATGTTCG GCGAGGCGGG GCCTGCGAGC GCGGCCACCG AGAATCGGAC
3961 GGGGGTAGTC TCAAGCTGGC CGGCCTGCTC TGGTGCCTGG CCTCGCGCCG CCGTGTATCG
4021 CCCCGCCCTG GGCGGCAAGG CTGGCCCGGT CGGCACCAGT TGCGTGAGCG GAAAGATGGC
4081 CGCTTCCCGG CCCTGCTGCA GGGAGCTCAA AATGGAGGAC GCGGCGCTCG GGAGAGCGGG
4141 CGGGTGAGTC ACCCACACAA AGGAAAAGGG CCTTTCCGTC CTCAGCCGTC GCTTCATGTG
4201 ACTCCACGGA GTACCGGGCG CCGTCCAGGC ACCTCGATTA GTTCTCGAGC TTTTGGAGTA
4261 CGTCGTCTTT AGGTTGGGGG GAGGGGTTTT ATGCGATGGA GTTTCCCCAC ACTGAGTGGG
4321 TGGAGACTGA AGTTAGGCCA GCTTGGCACT TGATGTAATT CTCCTTGGAA TTTGCCCTTT
4381 TTGAGTTTGG ATCTTGGTTC ATTCTCAAGC CTCAGACAGT GGTTCAAAGT TTTTTTCTTC
4441 CATTTCAGGT GTCGTGAGAA TTCTGTAGAG ATCCCTCGAC CTCGAGATCC ATTGTGCTGG
4501 ATCTGCGATC TAAGTAAGCT TCGAATTCTG CAGTCGAGCT ACCGGTCGCC ACCATGGCCT
4561 CCTCCGAGGA CGTCATCAAG GAGTTCATGC GCTTCAAGGT GCGCATGGAG GGCTCCGTGA
4621 ACGGCCACGA GTTCGAGATC GAGGGCGAGG GCGAGGGCCG CCCCTACGAG GGCACCCAGA
4681 CCGCCAAGCT GAAGGTGACC AAGGGCGGCC CCCTGCCCTT CGCCTGGGAC ATCCTGTCCC
4741 CCCAGTTCCA GTACGGCTCC AAGGTGTACG TGAAGCACCC CGCCGACATC CCCGACTACA
4801 AGAAGCTGTC CTTCCCCGAG GGCTTCAAGT GGGAGCGCGT GATGAACTTC GAGGACGGCG
4861 GCGTGGTGAC CGTGACCCAG GACTCCTCCC TGCAGGACGG CTCCTTCATC TACAAGGTGA
4921 AGTTCATCGG CGTGAACTTC CCCTCCGACG GCCCCGTAAT GCAGAAGAAG ACTATGGGCT
4981 GGGAGGCCTC CACCGAGCGC CTGTACCCCC GCGACGGCGT GCTGAAGGGC GAGATCCACA
5041 AGGCCCTGAA GCTGAAGGAC GGCGGCCACT ACCTGGTGGA GTTCAAGTCC ATCTACATGG
5101 CCAAGAAGCC CGTGCAGCTG CCCGGCTACT ACTACGTGGA CTCCAAGCTG GACATCACCT
5161 CCCACAACGA GGACTACACC ATCGTGGAGC AGTACGAGCG CGCCGAGGGC CGCCACCACC
5221 TGTTCCTGAG ATCTCGACAC TAGTGGATCC CCCGGGCTGC AGGAATTCGA TATCAAGCTT
5281 ATCGATAATC AACCTCTGGA TTACAAAATT TGTGAAAGAT TGACTGGTAT TCTTAACTAT
5341 GTTGCTCCTT TTACGCTATG TGGATACGCT GCTTTAATGC CTTTGTATCA TGCTATTGCT
5401 TCCCGTATGG CTTTCATTTT CTCCTCCTTG TATAAATCCT GGTTGCTGTC TCTTTATGAG
5461 GAGTTGTGGC CCGTTGTCAG GCAACGTGGC GTGGTGTGCA CTGTGTTTGC TGACGCAACC
5521 CCCACTGGTT GGGGCATTGC CACCACCTGT CAGCTCCTTT CCGGGACTTT CGCTTTCCCC
5581 CTCCCTATTG CCACGGCGGA ACTCATCGCC GCCTGCCTTG CCCGCTGCTG GACAGGGGCT
5641 CGGCTGTTGG GCACTGACAA TTCCGTGGTG TTGTCGGGGA AATCATCGTC CTTTCCTTGG
5701 CTGCTCGCCT GTGTTGCCAC CTGGATTCTG CGCGGGACGT CCTTCTGCTA CGTCCCTTCG
5761 GCCCTCAATC CAGCGGACCT TCCTTCCCGC GGCCTGCTGC CGGCTCTGCG GCCTCTTCCG
5821 CGTCTTCGCC TTCGCCCTCA GACGAGTCGG ATCTCCCTTT GGGCCGCCTC CCCGCATCGA
5881 TACCGTCGGC CCACTGCTCC CTAAACCTGA GCTAGCATTA TCCCTAATAC CTGCCACCCC
5941 ACTCTTAATC AGTGGTGGAA GAACGGTCTC AGAACTGTTT GTTTCAATTG GCCATTTAAG
6001 TTTAGTAGTA AAAGACTGGT TAATGATAAC AATGCATCGT AAAACCTTCA GAAGGAAAGG
6061 AGAATGTTTT GTGGACCACT TTGGTTTTCT TTTTTGCGTG TGGCAGTTTT AAGTTATTAG
6121 TTTTTAAAAT CAGTACTTTT TAATGGAAAC AACTTGACCA AAAATTTGTC ACAGAATTTT
6181 GAGACCCATT AAAAAAGTTA AATGAGAAAC CTGTGTGTTC CTTTGGTCAA CACCGAGACA
6241 TTTAGGTGAA AGACATCTAA TTCTGGTTTT ACGAATCTGG AAACTTCTTG AAAATGTAAT
6301 TCTTGAGTTA ACACTTCTGG GTGGAGAATA GGGTTGTTTT CCCCCCACAT AATTGGAAGG
6361 GGAAGGAATA TCATTTAAAG CTATGGGAGG GTTTCTTTGA TTACAACACT GGAGAGAAAT
6421 GCAGCATGTT GCTGATTGCC TGTCACTAAA ACAGGCCAAA AACTGAGTCC TTGGGTTGCA
6481 TAGAAAGCTT CATGTTGCTA AACCAATGTT AAGTGAATCT TTGGAAACAA AATGTTTCCA
6541 AATTACTGGG ATGTGCATGT TGAAACGTGG GTTAATTAAC TAGCCATGAC CAAAATCCCT
6601 TAACGTGAGT TTTCGTTCCA CTGAGCGTCA GACCCCGTAG AAAAGATCAA AGGATCTTCT
6661 TGAGATCCTT TTTTTCTGCG CGTAATCTGC TGCTTGCAAA CAAAAAAACC ACCGCTACCA
6721 GCGGTGGTTT GTTTGCCGGA TCAAGAGCTA CCAACTCTTT TTCCGAAGGT AACTGGCTTC
6781 AGCAGAGCGC AGATACCAAA TACTGTTCTT CTAGTGTAGC CGTAGTTAGG CCACCACTTC
6841 AAGAACTCTG TAGCACCGCC TACATACCTC GCTCTGCTAA TCCTGTTACC AGTGGCTGCT
6901 GCCAGTGGCG ATAAGTCGTG TCTTACCGGG TTGGACTCAA GACGATAGTT ACCGGATAAG
6961 GCGCAGCGGT CGGGCTGAAC GGGGGGTTCG TGCACACAGC CCAGCTTGGA GCGAACGACC
7021 TACACCGAAC TGAGATACCT ACAGCGTGAG CTATGAGAAA GCGCCACGCT TCCCGAAGGG
7081 AGAAAGGCGG ACAGGTATCC GGTAAGCGGC AGGGTCGGAA CAGGAGAGCG CACGAGGGAG
7141 CTTCCAGGGG GAAACGCCTG GTATCTTTAT AGTCCTGTCG GGTTTCGCCA CCTCTGACTT
7201 GAGCGTCGAT TTTTGTGATG CTCGTCAGGG GGGCGGAGCC TATGGAAAAA CGCCAGCAAC
7261 GCGGCCTTTT TACGGTTCCT GGCCTTTTGC TGGCCTTTTG CTCACATGTT CTTAATTAAA
7321 TTTTTCAAAA GTAGTTGACA ATTAATCATC GGCATAGTAT ATCGGCATAG TATAATACGA
7381 CTCACTATAG GAGGGCCATC ATGGCCAAGT TGACCAGTGC TGTCCCAGTG CTCACAGCCA
7441 GGGATGTGGC TGGAGCTGTT GAGTTCTGGA CTGACAGGTT GGGGTTCTCC AGAGATTTTG
7501 TGGAGGATGA CTTTGCAGGT GTGGTCAGAG ATGATGTCAC CCTGTTCATC TCAGCAGTCC
7561 AGGACCAGGT GGTGCCTGAC AACACCCTGG CTTGGGTGTG GGTGAGAGGA CTGGATGAGC
7621 TGTATGCTGA GTGGAGTGAG GTGGTCTCCA CCAACTTCAG GGATGCCAGT GGCCCTGCCA
7681 TGACAGAGAT TGGAGAGCAG CCCTGGGGGA GAGAGTTTGC CCTGAGAGAC CCAGCAGGCA
7741 ACTGTGTGCA CTTTGTGGCA GAGGAGCAGG ACTGAGGATA AGAATTGTAA CAAAAAACCC
7801 CGCCCCGGCG GGGTTTTTTG TTAATTAA
//