LOCUS PAL2.TXT 4801 BP DS-DNA CIRCULAR SYN 10-NOV-2003
DEFINITION -
ACCESSION
-
KEYWORDS -
SOURCE -
FEATURES
Location/Qualifiers
promoter 14..544
/note="CMV promoter"
5'UTR
545..828
/note="HTLV R-U5"
CDS
830..2236
/note="HPV2a L2 (codon modified)"
mutation 956..958
/note="Ile->Leu in Sally Roberts HPV2a clone"
polyA_signal 2246..2479
/note="SV40 Late polyA"
rep_origin
2497..3218
/note="MB1 Ori"
misc_feature
3240..3583
/note="SV40 homology"
promoter 3409..3583
/note="SV40 early promoter"
rep_origin
3432..3583
/note="SV40 Ori"
misc_feature
3481..3530
/note="SV40 transcription start points"
CDS
3496..3567
/note="SELP"
promoter 3618..3673
/note="EM7"
CDS
3693..4487
/note="Kan/Neo resistance"
polyA_signal
4535..4801
/note="HSV TK pA"
BASE COUNT 1063 A 1462 C 1259 G 1017 T 0 OTHER
ORIGIN -
1 CCTGCAGGGC CCACTAGTCC
GTTACATAAC TTACGGTAAA TGGCCCGCCT GGCTGACCGC
61 CCAACGACCC CCGCCCATTG
ACGTCAATAA TGACGTATGT TCCCATAGTA ACGCCAATAG
121 GGACTTTCCA TTGACGTCAA TGGGTGGAGT
ATTTACGGTA AACTGCCCAC TTGGCAGTAC
181 ATCAAGTGTA TCATATGCCA AGTACGCCCC
CTATTGACGT CAATGACGGT AAATGGCCCG
241 CCTGGCATTA TGCCCAGTAC ATGACCTTAT
GGGACTTTCC TACTTGGCAG TACATCTACG
301 TATTAGTCAT CGCTATTACC ATGATGATGC
GGTTTTGGCA GTACATCAAT GGGCGTGGAT
361 AGCGGTTTGA CTCACGGGGA TTTCCAAGTC
TCCACCCCAT TGACGTCAAT GGGAGTTTGT
421 TTTGGCACCA AAATCAACGG GACTTTCCAA
AATGTCGTAA CAACTCCGCC CCATTGACGC
481 AAATGAGCGG TAGGCGTGTA CGGTGGGAGG
TCTATATAAG CAGAGCTCGT TTAGTGAACC
541 GTAAGCTTCG AGGGGCTCGC ATCTCTCCTT
CACGCGCCCG CCGCCCTACC TGAGGCCGCC
601 ATCCACGCCG GTTGAGTCGC GTTCTGCCGC
CTCCCGCCTG TGGTGCCTCC TGAACTGCGT
661 CCGCCGTCTA GGTAAGTTTA AAGCTCAGGT
CGAGACCGGG CCTTTGTCCG GCGCTCCCTT
721 GGAGCCTACC TAGACTCAGC CGGCTCTCCA
CGCTTTGCCT GACCCTGCTT GCTCAACTCT
781 ACGTCTTTGT TTCGTTTTCT GTTCTGCGCC
GTTACAGATC CAAGCCACCA TGAGCATCCG
841 CGCAAAGAGG CGCAAAAGGG CAAGTCCAAC
CGATCTGTAC AGGACATGCA AGCAGGCCGG
901 CACATGTCCA CCCGATATCA TTCCCCGCGT
CGAGCAAAAC ACCCTGGCCG ACAAGATCTT
961 GAAATGGGGG TCCCTGGGCG TGTTCTTCGG
CGGCCTGGGC ATCGGGACAG GGTCCGGGAC
1021 CGGCGGCAGG ACCGGCTACA TCCCCGTGGG CAGCAGGCCA ACAACCGTGG TCGATATCGG
1081 CCCCACCCCA CGCCCACCCG TCATCATCGA GCCCGTCGGC GCAAGCGAGC CAAGCATCGT
1141 GACCCTCGTC GAAGATAGCT CCATCATCAA TGCCGGCGCC AGCCACCCAA CATTCACCGG
1201 CACCGGCGGG TTTGAGGTCA CCACAAGTAC AGTCACCGAT CCAGCAGTGC TCGACATTAC
1261 ACCAAGCGGC ACATCCGTCC AGGTCTCCAG CTCCAGCTTC CTGAATCCCT TGTATACCGA
1321 ACCCGCCATC GTCGAAGCCC CACAGACCGG CGAGGTCAGC GGGCACGTGC TGGTCTCCAC
1381 CGCAACAAGC GGCAGCCACG GCTACGAAGA GATCCCCATG CAAACCTTCG CAACCAGCGG
1441 CGGGTCTGGC ACCGAACCCA TTTCCAGCAC CCCATTGCCC GGGGTCAGAC GCGTCGCCGG
1501 CCCAAGGCTC TATTCCCGCG CAAACCAGCA GGTCCAGGTC CGCGACCCCG CCTTCCTGGC
1561 CCGCCCCGCC GACTTGGTCA CCTTCGATAA CCCCGTCTAC GATCCCGAAG AGACCATCAT
1621 CTTCCAACAC CCCGATCTCC ACGAACCCCC CGACCCCGAC TTCCTGGATA TCGTCGCCCT
1681 CCACCGCCCA GCACTGACCA GTCGCCGCGG CACCGTGCGC TTCAGCCGCC TCGGCAGGCG
1741 CGCCACCTTG AGGACAAGGT CCGGCAAGCA GATCGGCGCC AGAGTCCATT TCTACCACGA
1801 CATCAGCCCC ATCGGCACCG AAGAACTCGA AATGGAACCC CTGCTCCCAC CCGCCAGCAC
1861 CGACAATACC GACATGCTGT ACGACGTCTA CGCCGACAGC GACGTGCTGC AACCCCTGTT
1921 GGACGAACTG CCAGCAGCAC CCAGGGGCAG CCTGAGCCTC GCCGATACCG CCGTCAGCGC
1981 AACAAGTGCC AGCACCCTGA GAGGCAGTAC CACCGTGCCC CTGAGCTCCG GCATCGACGT
2041 CCCCGTCTAT ACAGGCCCCG ATATCGAGCC CCCAAACGTC CCCGGGATGG GCCCCCTGAT
2101 CCCCGTCGCC CCGAGTCTGC CCAGCAGCGT CTACATCTTC GGCGGCGACT ACTACCTCAT
2161 GCCCAGCTAC GTGCTCTGGC CCAAGAGGAG GAAGCGCGTG CATTACTTCT TCGCCGACGG
2221 GTTCGTCGCC GCATGAGCTC GAGGCTAGCT GGCCAGACAT GATAAGATAC ATTGATGAGT
2281 TTGGACAAAC CACAACTAGA ATGCAGTGAA AAAAATGCTT TATTTGTGAA ATTTGTGATG
2341 CTATTGCTTT ATTTGTAACC ATTATAAGCT GCAATAAACA AGTTAACAAC AACAATTGCA
2401 TTCATTTTAT GTTTCAGGTT CAGGGGGAGG TGTGGGAGGT TTTTTAAAGC AAGTAAAACC
2461 TCTACAAATG TGGTATGGAA TTCTTAATTA ACTAGCCATG ACCAAAATCC CTTAACGTGA
2521 GTTTTCGTTC CACTGAGCGT CAGACCCCGT AGAAAAGATC AAAGGATCTT CTTGAGATCC
2581 TTTTTTTCTG CGCGTAATCT GCTGCTTGCA AACAAAAAAA CCACCGCTAC CAGCGGTGGT
2641 TTGTTTGCCG GATCAAGAGC TACCAACTCT TTTTCCGAAG GTAACTGGCT TCAGCAGAGC
2701 GCAGATACCA AATACTGTTC TTCTAGTGTA GCCGTAGTTA GGCCACCACT TCAAGAACTC
2761 TGTAGCACCG CCTACATACC TCGCTCTGCT AATCCTGTTA CCAGTGGCTG CTGCCAGTGG
2821 CGATAAGTCG TGTCTTACCG GGTTGGACTC AAGACGATAG TTACCGGATA AGGCGCAGCG
2881 GTCGGGCTGA ACGGGGGGTT CGTGCACACA GCCCAGCTTG GAGCGAACGA CCTACACCGA
2941 ACTGAGATAC CTACAGCGTG AGCTATGAGA AAGCGCCACG CTTCCCGAAG GGAGAAAGGC
3001 GGACAGGTAT CCGGTAAGCG GCAGGGTCGG AACAGGAGAG CGCACGAGGG AGCTTCCAGG
3061 GGGAAACGCC TGGTATCTTT ATAGTCCTGT CGGGTTTCGC CACCTCTGAC TTGAGCGTCG
3121 ATTTTTGTGA TGCTCGTCAG GGGGGCGGAG CCTATGGAAA AACGCCAGCA ACGCGGCCTT
3181 TTTACGGTTC CTGGCCTTTT GCTGGCCTTT TGCTCACATG TTCTTAATTA AGCTGTACAC
3241 TGTGGAATGT GTGTCAGTTA GGGTGTGGAA AGTCCCCAGG CTCCCCAGCA GGCAGAAGTA
3301 TGCAAAGCAT GCATCTCAAT TAGTCAGCAA CCAGGTGTGG AAAGTCCCCA GGCTCCCCAG
3361 CAGGCAGAAG TATGCAAAGC ATGCATCTCA ATTAGTCAGC AACCATAGTC CCGCCCCTAA
3421 CTCCGCCCAT CCCGCCCCTA ACTCCGCCCA GTTCCGCCCA TTCTCCGCCC CATGACTGAC
3481 TAATTTTTTT TATTTATGCA GAGGCCGAGG CCGCCTCTGC CTCTGAGCTA TTCCAGAAGT
3541 AGTGAGGAGG CTTTTTTGGA GGCCTAGGCT TTTGCAAAAA GCTCCCGGGA GCTTGTATAT
3601 CCATTTTCGG ATCTGATCAG CACGTGTTGA CAATTAATCA TCGGCATAGT ATATCGGCAT
3661 AGTATAATAC GACTCACTAT AGGAGGGCCA CCATGATTGA ACAAGATGGA TTGCACGCAG
3721 GTTCTCCGGC CGCTTGGGTG GAGAGGCTAT TCGGCTATGA CTGGGCACAA CAGACAATCG
3781 GCTGCTCTGA TGCCGCCGTG TTCCGGCTGT CAGCGCAGGG GCGCCCGGTT CTTTTTGTCA
3841 AGACCGACCT GTCCGGTGCC CTGAATGAAC TGCAAGACGA GGCAGCGCGG CTATCGTGGC
3901 TGGCCACGAC GGGCGTTCCT TGCGCAGCTG TGCTCGACGT TGTCACTGAA GCGGGAAGGG
3961 ACTGGCTGCT ATTGGGCGAA GTGCCGGGGC AGGATCTCCT GTCATCTCAC CTTGCTCCTG
4021 CCGAGAAAGT ATCCATCATG GCTGATGCAA TGCGGCGGCT GCATACGCTT GATCCGGCTA
4081 CCTGCCCATT CGACCACCAA GCGAAACATC GCATCGAGCG AGCACGTACT CGGATGGAAG
4141 CCGGTCTTGT CGATCAGGAT GATCTGGACG AAGAGCATCA GGGGCTCGCG CCAGCCGAAC
4201 TGTTCGCCAG GCTCAAGGCG AGCATGCCCG ACGGCGAGGA TCTCGTCGTG ACACATGGCG
4261 ATGCCTGCTT GCCGAATATC ATGGTGGAAA ATGGCCGCTT TTCTGGATTC ATCGACTGTG
4321 GCCGGCTGGG TGTGGCGGAC CGCTATCAGG ACATAGCGTT GGCTACCCGT GATATTGCTG
4381 AAGAGCTTGG CGGCGAATGG GCTGACCGCT TCCTCGTGCT TTACGGTATC GCCGCTCCCG
4441 ATTCGCAGCG CATCGCCTTC TATCGCCTTC TTGACGAGTT CTTCTGAGCG GGACTCTGGG
4501 GTTCGAAATG ACCGACCAAG CGAATTCGCT AGAGGGAGGC TAACTGAAAC ACGGAAGGAG
4561 ACAATACCGG AAGGAACCCG CGCTATGACG GCAATAAAAA GACAGAATAA AACGCACGGT
4621 GTTGGGTCGT TTGTTCATAA ACGCGGGGTT CGGTCCCAGG GCTGGCACTC TGTCGATACC
4681 CCACCGAGAC CCCATTGGGG CCAATACGCC CGCGTTTCTT CCTTTTCCCC ACCCCACCCC
4741 CCAAGTTCGG GTGAAGGCCC AGGGCTCGCA GCCAACGTCG GGGCGGCAGG CCCTGCCATA
4801 G
//