From: Ji, Xinhua (NIH/NCI) [E]
Sent: Saturday, November 18, 2023 7:31 PM
To: List NIHXRAY-L
Subject: Newsletter 502 (November 20, 2023) NIH X-ray Diffraction
SIG
OCTOBER 2023 PUBLICATIONS BY MEMBERS OF THE
GROUP
1: Chen X, Walters KJ.
1H, 15N, 13C resonance assignments for proteasome shuttle
factor hHR23a.
Biomol NMR Assign. 2023 Oct
9.
doi:
10.1007/s12104-023-10157-z. Epub ahead of print. PMID: 37812322.
2: Ding J, Deme JC, Stagno
JR, Yu P, Lea SM,
Wang YX.
Capturing heterogeneous
conformers of cobalamin riboswitch by cryo-EM.
Nucleic Acids Res. 2023 Oct
13;51(18):9952-9960.
doi: 10.1093/nar/gkad651.
PMID: 37534568; PMCID: PMC10570017.
3: Du L, Wilson BAP, Li N,
Shah R, Dalilian M, Wang D, Smith EA, Wamiru A, Goncharova EI, Zhang P, O'Keefe
BR.
J Nat Prod. 2023 Oct
27;86(10):2283-2293.
doi:
10.1021/acs.jnatprod.3c00394. Epub 2023 Oct 16. PMID: 37843072; PMCID:
PMC10616853.
4: Collins JC, Magaziner SJ,
English M, Hassan B, Chen X, Balanda N, Anderson M, Lam A, Fernandez-Pol S,
Kwong B, Greenberg PL, Terrier B, Likhite ME, Kosmider O, Wang Y, Samara NL, Walters KJ,
Beck DB, Werner A.
Shared and Distinct Mechanisms
of UBA1 Inactivation Across Different Diseases.
bioRxiv [Preprint]. 2023 Oct
10:2023.10.10.561769.
doi:
10.1101/2023.10.10.561769. PMID: 37873213; PMCID: PMC10592724.
5: Wojtaszek JL, Hoff KE,
Longley MJ, Kaur P, Andres SN, Wang H, Williams
RS, Copeland WC.
Structure-specific roles for
PolG2-DNA complexes in maintenance and replication of mitochondrial DNA.
Nucleic Acids Res. 2023 Oct
13;51(18):9716-9732.
doi: 10.1093/nar/gkad679.
PMID: 37592734; PMCID: PMC10570022.
6: Pan Y, Zhan J, Jiang Y, Xia D, Scheuring S.
A concerted ATPase cycle of
the protein transporter AAA-ATPase Bcs1.
Nat Commun. 2023 Oct
11;14(1):6369.
doi: 10.1038/s41467-023-41806-5.
PMID: 37821516; PMCID: PMC10567702.
7: Yang Y, Boardman E, Deme
J, Alcock F, Lea
SM, Palmer T.
mBio. 2023 Oct 10:e0210023.
doi: 10.1128/mbio.02100-23.
Epub ahead of print. PMID: 37815362.
8: Erickson R, Huang C, Allen
C, Ireland J, Roth G, Zou Z, Lu J, Lafont BAP, Garza NL, Brumbaugh B, Zhao M,
Suzuki M, Olano L, Brzostowski J, Fischer ER, Twigg HL 3rd, Johnson RF, Sun PD.
SARS-CoV-2 infection of human
lung epithelial cells induces TMPRSS-mediated acute fibrin deposition.
Nat Commun. 2023 Oct
11;14(1):6380.
doi:
10.1038/s41467-023-42140-6. PMID: 37821447; PMCID: PMC10567911.
9: Appel CD, Bermek O, Dandey
VP, Wood M, Viverette E, Williams JG, Bouvette J, Riccio AA, Krahn JM, Borgnia
MJ, Williams
RS.
Mol Cell. 2023 Oct
19;83(20):3692-3706.e5.
doi:
10.1016/j.molcel.2023.09.024. Epub 2023 Oct 12. PMID: 37832548.
10: Koscielniak J, Li J, Sail
D, Swenson R, Anklin C, Rozovsky S, Byrd RA.
Exploring Sulfur Sites in
Proteins via Triple-Resonance 1H-Detected 77Se NMR.
J Am Chem Soc. 2023 Oct 31.
doi: 10.1021/jacs.3c07225.
Epub ahead of print. PMID: 37906952.
11: Kumar P, Tomita T, Gerken
TA, Ballard CJ, Lee YS, Weiss LM, Samara NL.
bioRxiv, 2023.10.26.564164.
METHODS – Cryo-EM,
Two Dozen Snapshots from One “Shot”
A.V.
Broeck, S. Klinge, “Principles
of human pre-60S biogenesis” PMID: 37410842.
READINGS & TUTORIALS – Macromolecular Cryocrystallography
D.J. Haas,
“Fifty
years on: why macromolecular cryocrystallography has been so successful” IUCr Newsletter (2023) 31(3).
W.A.
Hendrickson, “Facing the
phase problem” PMID: 37668214.
DATABASES – Structural
Biology
AlphaFold DB, BioCyc, DisProt,
ExPASy,
HAD,
HIC-Up,
NDB, PDB,
PDBe, PDB SARS-CoV-2 Resources, SARS-CoV-2 Related Structures, RaMP-DB, virusMED,
Xinhua Ji, Ph.D.
Senior Investigator
National Cancer Institute,
NIH
Phone: (301) 846-5035