To: X-Ray NIH
Subject: Newsletter
507 (February 5, 2024) NIH X-ray Diffraction SIG
JANUARY 2024 PUBLICATIONS BY MEMBERS OF THE
GROUP
1: Zhang J.
Recognition of the tRNA
structure: Everything everywhere but not all at once.
Cell Chem Biol. 2024 Jan
18;31(1):36-52.
doi: 10.1016/j.chembiol.2023.12.008.
Epub 2023 Dec 29. PMID: 38159570.
2: Gorman J, Cheung CS, Duan
Z, Ou L, Wang M, Chen X, Cheng C, Biju A, Sun Y, Wang P, Yang Y, Zhang B,
Boyington JC, Bylund T, Charaf S, Chen SJ, Du H, Henry AR, Liu T, Sarfo EK,
Schramm CA, Shen CH, Stephens T, Teng IT, Todd JP, Tsybovsky Y, Verardi R, Wang
D, Wang S, Wang Z, Zheng CY, Zhou T, Douek DC, Mascola JR, Ho DD, Ho M,
Nat Commun. 2024 Jan
4;15(1):285.
doi: 10.1038/s41467-023-44534-y.
PMID: 38177144; PMCID: PMC10767048.
3: Accogli A, Shakya S, Yang
T, Insinna C, Kim SY, Bell D, Butov KR, Severino M, Niceta M, Scala M, Lee HS,
Yoo T, Stauffer J, Zhao H, Fiorillo C, Pedemonte M, Diana MC, Baldassari S,
Zakharova V, Shcherbina A, Rodina Y, Fagerberg C, Roos LS, Wierzba J, Dobosz A,
Gerard A, Potocki L, Rosenfeld JA, Lalani SR, Scott TM, Scott D, Azamian MS,
Louie R, Moore HW, Champaigne NL, Hollingsworth G, Torella A, Nigro V, Ploski
R, Salpietro V, Zara F, Pizzi S, Chillemi G, Ognibene M, Cooney E, Do J,
Linnemann A, Larsen MJ, Specht S, Walters KJ,
Choi HJ, Choi M, Tartaglia M, Youkharibache P, Chae JH, Capra V, Park SG,
Westlake CJ.
Nat Commun. 2024 Jan
8;15(1):365.
doi: 10.1038/s41467-023-44611-2.
PMID: 38191484; PMCID: PMC10774338.
4: Pegu A, Lovelace SE,
DeMouth ME, Cully MD, Morris DJ, Li Y, Wang K, Schmidt SD, Choe M, Liu C, Chen
X, Viox E, Rowshan A, Taft JD, Zhang B, Xu K, Duan H, Ou L, Todd JP, Kong R, Li
H, Shaw GM, Doria-Rose NA,
Sci Transl Med. 2024 Jan 17;16(730):eadh9039.
doi:
10.1126/scitranslmed.adh9039. Epub 2024 Jan 17. PMID: 38232141.
5: Lian T, Guan R, Zhou BR, Bai Y,.
Structural mechanism of
synergistic targeting of the CX3CR1 nucleosome by PU.1 and C/EBPα.
Nat Struct Mol Biol. 2024 Jan
24.
doi:
10.1038/s41594-023-01189-z. Epub ahead of print. PMID: 38267599.
6: Casiano Matos J,
Harichandran K, Tang J, Sviridov DO, Sidoti Migliore G, Suzuki M, Olano LR,
Hobbs A, Kumar A, Paskel MU, Bonsignori M, Dearborn AD, Remaley AT, Marcotrigiano
J.
J Virol. 2024 Jan
23;98(1):e0084923.
doi: 10.1128/jvi.00849-23.
Epub 2024 Jan 4. PMID: 38174935; PMCID: PMC10804985.
7: Oda K, Wlodawer A.
Development of Enzyme-Based
Approaches for Recycling PET on an Industrial Scale.
Biochemistry. 2024 Jan 29.
doi: 10.1021/acs.biochem.3c00554.
Epub ahead of print. PMID: 38285602.
8: Ao Y, Grover JR, Gifford
L, Han Y, Zhong G, Katte R, Li W, Bhattacharjee R, Zhang B, Sauve S, Qin W,
Ghimire D, Haque MA, Arthos J, Moradi M, Mothes W, Lemke EA,
Bioorthogonal click labeling
of an amber-free HIV-1 provirus for in-virus single molecule imaging.
Cell Chem Biol. 2024 Jan
8:S2451-9456(23)00474-9.
doi:
10.1016/j.chembiol.2023.12.017. Epub ahead of print. PMID: 38232732.
9: Gridley J, Holland B,
Salinas E, Trivedi S, Dravid P, Elrod E, Jin F, Kumari A, Batista MN, Thapa M,
Rice CM, Marcotrigiano
J, Kapoor A, Grakoui A.
Hepatology. 2024 Jan 12.
doi: 10.1097/HEP.0000000000000753.
Epub ahead of print. PMID: 38214558.
10: Prabhakaran M, Matassoli
F, Leggat D, Hoover A, Srikanth A, Wu W, Henry AR, Wang J, Lin BC, Teng IT,
Schramm CA, Castro M, Serebryannyy L, Jean-Baptiste N, Moore C, Gajjala S, Todd
JM, McCarthy E, Narpala S, Francica J, Program VP, Corbett-Helaire KS, Douek
DC,
Adjuvanted SARS-CoV-2 spike
protein vaccination elicits long-lived plasma cells in nonhuman primates.
Sci Transl Med. 2024 Jan
3;16(728):eadd5960.
doi: 10.1126/scitranslmed.add5960.
Epub 2024 Jan 3. PMID: 38170789.
11: Levdansky Y, Valkov E.
Methods Mol Biol. 2024;2723:1-17.
doi:
10.1007/978-1-0716-3481-3_1. PMID: 37824061.
12: Hayne CK, Butay KJU,
Stewart ZD, Krahn JM, Perera L, Williams JG, Petrovitch RM, Deterding LJ,
Matera AG, Borgnia MJ, Stanley
RE.
Nat Struct Mol Biol. 2024 Jan
9.
doi: 10.1038/s41594-024-01213-w.
Epub ahead of print. Erratum for: Nat Struct Mol Biol. 2023 Jun;30(6):824-833.
PMID: 38196035.
For timely listing, please send a heads-up E-mail to the Editor upon publication.
METHODS – XFEL, 3D-printed liquid sheet jet technology
M. Trebbin,
“Thinner than a knife’s
edge: 3D-printed liquid sheet jet technology for solution phase XFEL
experiments” PMID: 37910141.
METHODS – Cryo-EM, in Rational Design of Hybrid Inhibitors
M.
Kschonsak et al., “Cryo-EM
reveals an unprecedented binding site for Nav1.7 inhibitors enabling rational
design of potent hybrid inhibitors” PMID: 36975198.
READINGS & TUTORIALS – Macromolecular Crystallography
D.J. Haas,
“Fifty
years on: why macromolecular cryocrystallography has been so successful” IUCr Newsletter (2023) 31(3).
W.A.
Hendrickson, “Facing the
phase problem” PMID: 37668214.
DATABASES – Structural Biology
AlphaFold DB, BioCyc, DisProt,
ExPASy,
HAD,
HIC-Up,
NDB, PDB,
PDBe, PDB SARS-CoV-2 Resources, SARS-CoV-2 Related Structures, RaMP-DB, virusMED,
Xinhua Ji, Ph.D.
Senior Investigator
National Cancer Institute,
NIH
Phone: (301) 846-5035