To:                                                                                X-Ray NIH

Subject: Newsletter 509 (March 4, 2024) NIH X-ray Diffraction SIG

 

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FEBRUARY 2024 PUBLICATIONS BY MEMBERS OF THE GROUP

 

1: Lee YS, Levdansky Y, Jung Y, Kim VN, Valkov E.

Deadenylation kinetics of mixed poly(A) tails at single-nucleotide resolution.

Nat Struct Mol Biol. 2024 Feb 19.

doi: 10.1038/s41594-023-01187-1. Epub ahead of print. PMID: 38374449.

 

2: Esser L, Xia D.

Mitochondrial Cytochrome <i>bc</i><sub>1</sub> Complex as Validated Drug Target: A Structural Perspective.

Trop Med Infect Dis. 2024 Feb 1;9(2):39.

doi: 10.3390/tropicalmed9020039. PMID: 38393128; PMCID: PMC10892539.

 

3: Rimkute I, Chaimongkol N, Woods KD, Nagata BM, Darko S, Gudbole S, Henry AR, Sosnovtsev SV, Olia AS, Verardi R, Bok K, Todd JP, Woodward R, Kwong PD, Douek DC, Alves DA, Green KY, Roederer M.

A non-human primate model for human norovirus infection.

Nat Microbiol. 2024 Feb 6.

doi: 10.1038/s41564-023-01585-7. Epub ahead of print. Erratum in: Nat Microbiol. 2024 Feb 15;: PMID: 38321182.

 

4: Mayer MP, Blair L, Blatch GL, Borges TJ, Chadli A, Chiosis G, de Thonel A, Dinkova-Kostova A, Ecroyd H, Edkins AL, Eguchi T, Fleshner M, Foley KP, Fragkostefanakis S, Gestwicki J, Goloubinoff P, Heritz JA, Heske CM, Hibshman JD, Joutsen J, Li W, Lynes M, Mendillo ML, Mivechi N, Mokoena F, Okusha Y, Prahlad V, Repasky E, Sannino S, Scalia F, Shalgi R, Sistonen L, Sontag E, van Oosten-Hawle P, Vihervaara A, Wickramaratne A, Wang SXY, Zininga T.

Stress biology: Complexity and multifariousness in health and disease.

Cell Stress Chaperones. 2024 Feb 3;29(1):143-157.

doi: 10.1016/j.cstres.2024.01.006. Epub ahead of print. PMID: 38311120.

 

5: Collins JC, Magaziner SJ, English M, Hassan B, Chen X, Balanda N, Anderson M, Lam A, Fernandez-Pol S, Kwong B, Greenberg PL, Terrier B, Likhite ME, Kosmider O, Wang Y, Samara NL, Walters KJ, Beck DB, Werner A.

Shared and distinct mechanisms of UBA1 inactivation across different diseases.

EMBO J. 2024 Feb 15.

doi: 10.1038/s44318-024-00046-z. Epub ahead of print. PMID: 38360993.

 

6: Folco HD, Xiao H, Wheeler D, Feng H, Bai Y, Grewal SIS.

The cysteine-rich domain in CENP-A chaperone Scm3HJURP ensures centromere targeting and kinetochore integrity.

Nucleic Acids Res. 2024 Feb 28;52(4):1688-1701.

doi: 10.1093/nar/gkad1182. PMID: 38084929; PMCID: PMC10899784.

 

7: Gerard L, Duvivier L, Fourrez M, Salazar P, Sprimont L, Xia D, Ambudkar SV, Gottesman MM, Gillet JP.

Identification of two novel heterodimeric ABC transporters in melanoma: ABCB5β/B6 and ABCB5β/B9.

J Biol Chem. 2024 Feb;300(2):105594.

doi: 10.1016/j.jbc.2023.105594. Epub 2023 Dec 23. PMID: 38145744; PMCID: PMC10828454.

 

8: Collette AM, Hassan SA, Schmidt SI, Lara AJ, Yang W, Samara NL.

An unusual dual sugar-binding lectin domain controls the substrate specificity of a mucin-type O-glycosyltransferase.

Sci Adv. 2024 Mar;10(9):eadj8829.

doi: 10.1126/sciadv.adj8829. Epub 2024 Feb 28. PMID: 38416819; PMCID: PMC10901373.

 

9: Duan H, Corrigan AR, Cheng C, Biju A, Gonelli CA, Olia AS, Teng IT, Xu K, O'Dell S, Narpala S, Castro M, Serebryannyy L, Wang J, Parchment DK, Sarfo EK, van Schooten J, Todd JP, Wang S, Harris DR, Geng H, Jafari AJ; VRC Production Program; Woodward RA, Doria-Rose NA, Foulds KE, McDermott AB, van Gils MJ, Koup RA, Pierson TC, Kwong PD, Mascola JR.

Long trimer-immunization interval and appropriate adjuvant reduce immune responses to the soluble HIV-1-envelope trimer base.

iScience. 2024 Jan 11;27(2):108877.

doi: 10.1016/j.isci.2024.108877. PMID: 38318357; PMCID: PMC10839646.

 

10: Iwaï H, Beyer HM, Johansson JEM, Li M, Wlodawer A.

The three-dimensional structure of the Vint domain from Tetrahymena thermophila suggests a ligand-regulated cleavage mechanism by the HINT fold.

FEBS Lett. 2024 Feb 13.

doi: 10.1002/1873-3468.14817. Epub ahead of print. PMID: 38351630.

 

11: Rimkute I, Chaimongkol N, Woods KD, Nagata BM, Darko S, Gudbole S, Henry AR, Sosnovtsev SV, Olia AS, Verardi R, Bok K, Todd JP, Woodward R, Kwong PD, Douek DC, Alves DA, Green KY, Roederer M.

Publisher Correction: A non-human primate model for human norovirus infection.

Nat Microbiol. 2024 Feb 15.

doi: 10.1038/s41564-024-01636-7. Epub ahead of print. Erratum for: Nat Microbiol. 2024 Feb 6;: PMID: 38360987.

 

12: Hayne CK, Butay KJU, Stewart ZD, Krahn JM, Perera L, Williams JG, Petrovitch RM, Deterding LJ, Matera AG, Borgnia MJ, Stanley RE.

Author Correction: Structural basis for pre-tRNA recognition and processing by the human tRNA splicing endonuclease complex.

Nat Struct Mol Biol. 2024 Feb;31(2):390.

doi: 10.1038/s41594-024-01213-w. Erratum for: Nat Struct Mol Biol. 2023 Jun;30(6):824-833. PMID: 38196035.

 

For timely listing, please send a heads-up E-mail to the Editor upon publication.

 

 

METHODS – Cryo-EM, Data Archiving and Validation

 

G.J. Kleywegt, “Community recommendations on cryoEM data archiving and validation” PMID: 38358351.

 

 

METHODS – XFEL, 3D-printed liquid sheet jet technology

 

M. Trebbin, “Thinner than a knife’s edge: 3D-printed liquid sheet jet technology for solution phase XFEL experiments” PMID: 37910141.

 

 

METHODS – Cryo-EM, in Rational Design of Hybrid Inhibitors

 

M. Kschonsak et al., “Cryo-EM reveals an unprecedented binding site for Nav1.7 inhibitors enabling rational design of potent hybrid inhibitors” PMID: 36975198.

 

 

READINGS & TUTORIALS – Macromolecular Crystallography

 

D.J. Haas, “Fifty years on: why macromolecular cryocrystallography has been so successful” IUCr Newsletter (2023) 31(3).

 

W.A. Hendrickson, “Facing the phase problem” PMID: 37668214.

 

 

DATABASES – Structural Biology


AlphaFold DB, BioCyc, DisProt, ExPASy, HAD, HIC-Up, NDB, PDB, PDBe, PDB SARS-CoV-2 Resources, SARS-CoV-2 Related Structures, RaMP-DB, virusMED,

 

Xinhua Ji, Ph.D.

Senior Investigator

National Cancer Institute, NIH

Phone: (301) 846-5035