To: X-Ray NIH
Subject: Newsletter
511 (April 1, 2024) NIH X-ray Diffraction SIG
MARCH 2024 PUBLICATIONS BY MEMBERS OF THE
GROUP
1: Lu X,
Chandravanshi M, Sabbasani VR, Gaikwad S, Hughitt VK, Gyabaah-Kessie N, Scroggins
BT, Das S, Myint W, Clapp ME, Schwieters CD, Dyba MA, Bolhuis DL, Koscielniak
JW, Andresson T, Emanuele MJ, Brown NG, Matsuo H, Chari R, Citrin DE, Mock BA,
Swenson RE, Walters KJ.
A structure-based designed
small molecule depletes hRpn13Pru and a select group of KEN box
proteins.
Nat Commun.
2024 Mar 20;15(1):2485. doi: 10.1038/s41467-024-46644-7. PMID: 38509117; PMCID:
PMC10954691.
2: Dyda F, Hickman
AB.
A retrotransposon for
site-specific gene transfer.
Nat Biotechnol.
2024 Mar 18. doi: 10.1038/s41587-024-02180-9. Epub ahead of print. PMID:
38499759.
3: Torricella
F, Tugarinov V, Clore
GM.
Adv Sci
(Weinh). 2024 Mar 12:e2309217. doi: 10.1002/advs.202309217. Epub ahead of
print. PMID: 38476051.
4: Johnson S,
Deme JC, Furlong EJ, Caesar JJE, Chevance FFV, Hughes KT, Lea SM.
Structural basis of
directional switching by the bacterial flagellum.
Nat Microbiol.
2024 Mar 8. doi: 10.1038/s41564-024-01630-z. Epub ahead of print. PMID:
38459206.
5: Park JE, Kim
TS, Zeng Y, Mikolaj M, Il Ahn J, Alam MS, Monnie CM, Shi V, Zhou M, Chun TW,
Maldarelli F, Narayan K, Ahn J, Ashwell JD, Strebel K, Lee KS.
Nat Commun.
2024 Mar 5;15(1):2017. doi: 10.1038/s41467-024-46306-8. PMID: 38443376; PMCID: PMC10914751.
6: Lederhofer
J, Tsybovsky Y, Nguyen L, Raab JE, Creanga A, Stephens T, Gillespie RA, Syeda
HZ, Fisher BE, Skertic M, Yap C, Schaub AJ, Rawi R, Kwong PD, Graham BS, McDermott AB, Andrews SF, King NP, Kanekiyo M.
Immunity. 2024
Mar 12;57(3):574-586.e7. doi: 10.1016/j.immuni.2024.02.003. Epub 2024 Mar 1.
PMID: 38430907; PMCID: PMC10962683.
7: Boyd LF,
Jiang J, Ahmad J, Natarajan K, Margulies DH.
J Immunol. 2024
Mar 8:ji2300839. doi: 10.4049/jimmunol.2300839. Epub ahead of print. PMID:
38456672.
8: MacDonald
ME, Wells NGM, Hassan BA, Dudley JA, Walters KJ,
Korzhnev DM, Aramini JM, Smith CA.
Effects of Xylanase A double
mutation on substrate specificity and structural dynamics.
J Struct Biol.
2024 Mar 2;216(2):108082. doi: 10.1016/j.jsb.2024.108082. Epub ahead of print.
PMID: 38438058.
9: Muli CS,
Tarasov SG, Walters KJ.
Chem Sci. 2024
Feb 6;15(11):4041-4053. doi: 10.1039/d3sc06370d. PMID: 38487241; PMCID:
PMC10935766.
10: Bu W, Kumar
A, Board NL, Kim J, Dowdell K, Zhang S, Lei Y, Hostal A, Krogmann T, Wang Y,
Pittaluga S, Marcotrigiano
J, Cohen JI.
Immunity. 2024
Mar 12;57(3):559-573.e6. doi: 10.1016/j.immuni.2024.02.008. PMID: 38479361.
11: Lauber F,
Deme JC, Liu X, Kjær A, Miller HL, Alcock F, Lea SM, Berks BC.
Nat Microbiol.
2024 Mar 27. doi: 10.1038/s41564-024-01644-7. Epub ahead of print. PMID:
38538833.
For timely listing, please send a heads-up E-mail to the Editor upon
publication.
METHODS – Integrative
Structural Biology
M. Bochtler, “X-rays, electrons, and
neutrons as probes of atomic matter” PMID: 38412856.
METHODS – XFEL,
3D-printed liquid sheet jet technology
M. Trebbin, “Thinner than a knife’s edge:
3D-printed liquid sheet jet technology for solution phase XFEL experiments” PMID: 37910141.
METHODS – Cryo-EM,
in Rational Design of Hybrid Inhibitors
G.J. Kleywegt,
“Community recommendations on
cryoEM data archiving and validation” PMID: 38358351.
M. Kschonsak et
al., “Cryo-EM reveals an
unprecedented binding site for Nav1.7 inhibitors enabling rational design of
potent hybrid inhibitors” PMID: 36975198.
READINGS & TUTORIALS – Macromolecular Crystallography
D.J. Haas, “Fifty
years on: why macromolecular cryocrystallography has been so successful” IUCr Newsletter
(2023) 31(3).
W.A.
Hendrickson, “Facing the phase problem” PMID: 37668214.
DATABASES – Structural
Biology
AlphaFold
DB, BioCyc, DisProt, ExPASy, HAD, HIC-Up, NDB, PDB, PDBe, PDB SARS-CoV-2 Resources, SARS-CoV-2
Related Structures, RaMP-DB, virusMED,
Xinhua Ji, Ph.D.
Senior Investigator
National Cancer Institute,
NIH
Phone: (301) 846-5035