Newsletter 515 (June 3,
2024) NIH X-ray Diffraction SIG
May 2024 PUBLICATIONS BY MEMBERS OF
THE GROUP
1: Zhan
J, Zeher A, Huang R, Tang WK, Jenkins LM, Xia D.
Nat Commun. 2024 May 31;15(1):4655. doi:
10.1038/s41467-024-49029-y.
PMID:
38821922; PMCID: PMC11143374.
2: Zhang
B, Chuang GY, Biju A, Biner D, Cheng J, Wang Y, Bao S, Chao CW, Lei H, Liu T, Nazzari AF, Yang Y, Zhou T, Chen SJ, Chen X, Kong WP, Ou L,
Parchment DK, Sarfo EK, SiMa H, Todd JP, Wang S,
Woodward RA, Cheng C, Rawi R, Mascola
JR, Kwong
PD.
Cholesterol reduction by
immunization with a PCSK9 mimic.
Cell
Rep. 2024 May 30;43(6):114285. doi:
10.1016/j.celrep.2024.114285. Epub ahead of print.
PMID:
38819987.
3: Jia
M, Zhao H, Morano NC, Lu H, Lui YM, Du H, Becker JE,
Yuen KY, Ho DD, Kwong
PD, Shapiro L, To KK, Wu X.
Human neutralizing antibodies
target a conserved lateral patch on H7N9 hemagglutinin head.
Nat Commun. 2024 May 27;15(1):4505. doi:
10.1038/s41467-024-48758-4.
PMID:
38802413; PMCID:PMC11130183.
4: Wang
S, Chan KW, Wei D, Ma X, Liu S, Hu G, Park S, Pan R, Gu Y, Nazzari
AF, Olia AS, Xu K, Lin BC, Louder MK, McKee K, Doria-Rose NA, Montefiori D, Seaman MS, Zhou T, Kwong
PD, Arthos J, Kong XP, Lu S.
Nat Commun. 2024 May 21;15(1):4301. doi:
10.1038/s41467-024-48514-8.
PMID:
38773089; PMCID: PMC11109196.
5:
Diarra S, Ghosh S, Cissé L, Coulibaly T, Yalcouyé A, Harmison G, Diallo S,
Diallo SH, Coulibaly O, Schindler A, Cissé CAK, Maiga AB, Bamba S, Samassekou O, Khokha MK, Mis EK, Lakhani SA, Donovan FX, Jacobson S,
Blackstone C, Guinto CO, Landouré G, Bonifacino JS, Fischbeck KH, Grunseich
C.
AP2A2 mutation and defective
endocytosis in a Malian family with hereditary spastic paraplegia.
Neurobiol Dis. 2024 May 19;198:106537. doi: 10.1016/j.nbd.2024.106537. Epub
ahead of print.
PMID:
38772452.
6: Chinnam NB, Thapar
R, Arvai AS, Sarker AH, Soll JM, Paul T, Syed A,
Rosenberg DJ, Hammel M, Bacolla A, Katsonis P, Asthana A, Tsai MS, Ivanov I, Lichtarge O, Silverman RH, Mosammaparast
N, Tsutakawa SE, Tainer JA.
J Biol
Chem. 2024 May 13:107368. doi:
10.1016/j.jbc.2024.107368. Epub ahead of print.
PMID:
38750793.
7: Kumar
P, Tomita T, Gerken TA, Ballard CJ, Lee YS, Weiss LM,
Samara
NL.
Nat Commun. 2024 May 6;15(1):3792. doi:
10.1038/s41467-024-48253-w.
PMID:
38710711; PMCID: PMC11074326.
8: Xu J,
Zhou T, McKee K, Zhang B, Liu C, Nazzari AF, Pegu A, Shen CH, Becker JE, Bender MF, Chan P, Changela A, Chaudhary R, Chen X, Einav
T, Kwon YD, Lin BC, Louder MK, Merriam JS, Morano NC,
O'Dell S, Olia AS, Rawi R, Roark RS, Stephens T, Teng
IT, Tourtellott-Fogt E, Wang S, Yang ES, Shapiro L, Tsybovsky Y, Doria-Rose NA, Casellas
R, Kwong
PD.
Ultrapotent Broadly
Neutralizing Human-llama Bispecific Antibodies against HIV-1.
Adv Sci
(Weinh). 2024 May 5:e2309268.doi:
10.1002/advs.202309268. Epub ahead of print.
PMID:
38704686.
9: Osei-Amponsa V, Magidson V, Walters KJ.
STAR Protoc. 2024 May 2;5(2):103060. doi:
10.1016/j.xpro.2024.103060. Epub ahead of print.
PMID:
38700979; PMCID: PMC11078693.
10:
Jiang J, Natarajan K, Margulies DH.
Chaperone-mediated MHC-I
peptide exchange in antigen presentation.
IUCrJ. 2024 May 1;11(Pt 3):287-298. doi:
10.1107/S2052252524002768.
PMID:
38656309; PMCID: PMC11067752.
11: De
Pace R, Maroofian R, Paimboeuf
A, Zamani M, Zaki MS, Sadeghian S, Azizimalamiri R, Galehdari H, Zeighami J, Williamson CD, Fleming E, Zhou D, Gannon JL, Thiffault I, Roze E, Suri M, Zifarelli
G, Bauer P, Houlden H, Severino M, Patten SA, Farrow
E, Bonifacino JS.
Brain.
2024 May 3;147(5):1751-1767. doi:
10.1093/brain/awad427.
PMID:
38128568; PMCID: PMC11068110.
For
timely listing, please send a heads-up E-mail to the Editor upon publication.
METHODS – Integrative
Structural Biology
M. Bochtler, “X-rays,
electrons, and neutrons as probes of atomic matter” PMID: 38412856.
METHODS – XFEL,
3D-printed liquid sheet jet technology
M. Trebbin, “Thinner
than a knife’s edge: 3D-printed liquid sheet jet technology for solution phase
XFEL experiments” PMID: 37910141.
METHODS – Micro-ED,
AlphaFold-Assisted
J.E. Miller et al., “AlphaFold-assisted
structure determination of a bacterial protein of unknown function using X-ray
and electron crystallography” PMID: 38451205
METHODS – Cryo-EM,
in Rational Design of Hybrid Inhibitors
B. Greber et al., “High-resolution
cryo-EM of the human CDK-activating kinase for structure-based drug design” PMID: 38480681
G.J. Kleywegt, “Community
recommendations on cryoEM data archiving and
validation” PMID: 38358351.
M. Kschonsak et al., “Cryo-EM
reveals an unprecedented binding site for Nav1.7 inhibitors enabling rational
design of potent hybrid inhibitors” PMID: 36975198.
READINGS & TUTORIALS – Macromolecular Crystallography
D.J.
Haas, “Fifty years on: why macromolecular cryocrystallography
has been so successful” IUCr Newsletter (2023) 31(3).
W.A.
Hendrickson, “Facing
the phase problem” PMID: 37668214.
DATABASES – Structural
Biology
AlphaFold DB, BioCyc, DisProt, ExPASy, HAD, HIC-Up, NDB, PDB, PDBe, PDB SARS-CoV-2 Resources, SARS-CoV-2 Related Structures, RaMP-DB, virusMED,